Here is a complete list of Lab publications on PubMed
Pediatric neuro-oncology: Highlights of the last quarter-century.
Power P, Straehla JP, Fangusaro J, Bandopadhayay P, Manoharan N. Neoplasia. 2025 Jan: 59:101098. doi: 101016/j.neo.2024.101098. Epub 2024 Dec 4.
FOXR2 targets LHX6+/DLX+ neural lineages to drive CNS neuroblastoma.
Jessa S, De Cola A, Chandarana B, McNicholas M, Hebert S, Ptack A, Faury D, Tsai JW, Korshunov A, Phoenix TN, Ellezam B, Jones DTW, Taylor MD, Bandopadhayay P, Pathania M, Jabado N, Kleinman CL. Cancer Res. 2024 Nov 4: doi:10.1158/0008-5472-CAN-24-2248. Online ahead of print.
Multimodal deep learning improves recurrence risk prediction in pediatric low-grade gliomas.
Mahootiha M, Tak D, Ye Z, Zapaishchykova A, Likitlersuang J, Climent Pardo JC, Boyd A, Vajapeyam S, Chopra R, Prabhu SP, Liu KX, Elhalawani H, Nabavizadeh A, Familiar A, Mueller S, Aerts HJWL, Bandopadhayay P, Ligon KL, Haas-Kogan D, Poussaint TY, Qadir HA, Balasingham I, Kann BH. Neuro Oncol. 2024 Aug 30: noae173. doi:10.1093/neuonc/noae173. Online ahead of print.
Genome-wide CRISPR-Cas9 knockout screens identify DNMTA1 as a druggable dependency in sonic hedgehog medulloblastoma.
Tsiami F, Lago C, Pozza N, Piccioni F, Zhao X, Lulsberg F, Root DE, Tiberi L, Kool M, Schittenhelm J, Bandopadhayay P, Segal RA, Tabatabai G, Merk DJ. Acta Neuropathol Commun. 2024 August 7;12(1):125. doi: 10.1186/s40478-024-01831-x.
Molecular profiling of 888 pediatric tumors informs future precision trials and data-sharing initiatives in pediatric cancer.
Forrest SJ, Gupta H, Ward A, Li YY, Doan D, Al-Albraheemi A, Alexandrescu S, Bandopadhayay P, Shusterman Z, Mullen EA, Collins NB, Chi SN, Wright KD, Kumari P, Mazo T, Ligon KL, Shivdasani P, Manam M, MacConaill LE, Ceca E, Benich SN, London WB, Schilsky RL, Bruinooge SS, Guidry Auvil JM, Cerami E, Rollins BJ, Meyerson ML, Lindeman NI, Johnson BE, Cherniack AD, Church AJ, Janeway JA. Nat Commun. 2024 July 11;15(1):5837. doi: 10.1038/s41467-024-49944-0.
Resistance, rebound, and recurrence growth patterns in pediatric low-grade glioma treated by MAPK inhibition: A modified Delphi approach to build international consensus-based definitions-International Pediatric Low-Grade Glioma Coalition
O’Hare P, Cooney T, de Blank P, Gutmann DH, Kieran M, Milde T, Fangusaro J, Fisher M, Avula S, Packer R, Fukuoka K, Mankad K, Mueller S, Waanders AJ, Opocher E, Bouffet E, Raabe E, Entz Werle N, Aziz AA, Robison NJ, Harnaiz Driever P, Russo M, Schouten N, van Tilburg CM, Sehested A, Grill J, Bandopadhayay P, Kilday JP, Witt O, Ashley DM, Ertl-Wagner B, Tabori U, Hargrave DR. Neuro Oncol. 2024 Aug 5;26(8):1357-1366. doi: 10.1093/neuonc/noae074.
Noninvasive molecular subtyping of pediatric low-grade glioma with self-supervised transfer learning
Tak D, Ye Z, Zapaischykova A, Zha Y, Boyd A, Vajapeyam S, Chopra R, Hayat H, Prabhu SP, Liu KX, Elhalawani H, Nabavizadeh A, Familiar A, Resnick AC, Mueller S, Aerts HJWL, Bandopadhayay P, Ligon KL, Haas-Kogan DA, Poussaint T, Kann BH. Radiol Artif Intell. 2024 May;6(3):e230333. doi:10.1148/ryai.230333
Aberrant DNA repair reveals a vulnerability in histone H3.3-mutant brain tumors.
Giacomini, G, Piquit S, Chevaliier O, Dabin J, Bai SK, Kim B, Siddaway R, Raught B, Coyaud E, Shan CM, Reid RJD, Toda T, Rothstein R, Barra V, Wilhelm T, Hamadat S, Bertin C, Crane A, Dubois F, Forne I, Imhof A, Bandopadhayay P, Beroukhim R, Naim V, Jia S, Hawkins C, Rondinelli B, Polo SE. Nucleic Acids Res. 2024 Mar 21;52(5):2372-2388. doi: 10.1093/nar/gkad1257.
Translation of non-canonical open reading frames as a cancer cell survival mechanism in childhood medulloblastoma
Hofman DA, Ruiz-Orera J, Yannuzzi I, Murugesan R, Brown A, Clauser KR, Condurat AL, van Dinter JT, Engels SAG, Goodale A, van der Lugt J, Abid T, Want L, Zhou KN, Vogelzang J, Ligon KL, Phoenix TN, Roth JA, Root DE, Hubner N, Golub TR, Bandopadhayay P, van Heesch S, Prensner JR. Mol Cell. 2024 Jan 18;84(2):261-276.e18. doi: 10.1016/j.molcel.2023.12.003. Epub 2024 Jan 3.